PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018292m
Common NameCISIN_1g018292mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 359aa    MW: 40341.5 Da    PI: 9.9486
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018292mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-1771130155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  orange1.1g018292m  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 130
                        57*******************766644468557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-1771139IPR016177DNA-binding domain
PfamPF008474.9E-1371130IPR001471AP2/ERF domain
PROSITE profilePS5103220.12672138IPR001471AP2/ERF domain
SMARTSM003801.9E-2572144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1572139IPR001471AP2/ERF domain
PRINTSPR003673.2E-57384IPR001471AP2/ERF domain
PRINTSPR003673.2E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMASSSSDPG LKHEVGSSSG CGGGGESSEA VIANDQLLLY RGLKKAKKER GCTAKERISR  60
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NVSREDYLAS LRRKSSGFSR GISKYRGLSS  180
RWDSSLARMA GSEYFNNAHY GAADDPSTES EYLGGFCIDR KIDLTSYIKW WGPNKTRQAD  240
SAKKSLEEGK HAYAEDISSE LKKSEWEIRP TEPYQMPRLG VSPGGKKHKG SAVSALSILS  300
KSTAYKNFQE KALKKQDSNT DNEKMRTKIL LTKWTMVRLL RNQRVMMVGV RDLELHLE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.114740.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421325.10.0hypothetical protein CICLE_v10005012mg
SwissprotQ8GWK21e-137AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A067DZI00.0A0A067DZI0_CITSI; Uncharacterized protein
STRINGVIT_08s0007g08580.t011e-163(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-134AP2 family protein